Поліморфізм мікросателітних локусів Globoderа pallida з популяцій різного походження
Анотація
Aim. The comprehensive population studies were conducted to elucidate the genetic diversity and virulence of Globodera pallida. Methods. The population studies were combined with SSR-analysis of genetic diversity inferred from six microsatellite loci to characterize 10 populations of G. pallida of different origin. Results. A phylogenetic analysis based on six microsatellite loci genotyping data showed that the Ukrainian populations of Globodera pallida were almost identical to other Globodera pallida populations from Europe representing Pa2/3 virulence group. Limited genetic variability inferred from the microsatellite loci polymorphisms was observed between Globodera pallida populations distributed in Europe and Ukraine, accounting for 82.3–93.4 % (P<0.05) of the genetic variability within the populations studied. These results support a hypothesis that populations in Ukraine are the result of the continuing spread of Globodera pallida within Europe and not the result of additional introductions from South America. Conclusions. The panel of 6 microsatellite loci allowed to investigate the genetic variability of Globodera pallida populations of different geographical origin and selection on three sources of resistance. The results revealed that selected Globodera pallida populations were similar but not identical indicating that changes in allele and genotype frequency had taken place as a result of the selection regime, but these neutral markers were not yet applicable for virulence monitoring.
Keywords: potato cyst nematodes, microsatellite loci, phylogeneic relationship, virulence.
Посилання
Mugniery D., Plantard O., Fournet S., Grenier E. Risk assessment of cyst nematode evolution and durability of potato cyst nematode resistance. ENDURE International Conference 2008 Diversifying crop protection, 12–15 October 2008 La Grande–Motte, France. Oral presentations. Available from: http://www.endure-network.eu/content/download/4764/39273/file/Full%20text%20O.63.pdf
Picard D., Plantard O. What constitutes a population for the plant parasitic nematode Globodera pallida in its native area (Peru)? International Journal for Parasitology. 2006. V. 36 (1). P. 115-122. doi: 10.1016/j.ijpara.2005.08.015
Picard D., Sempere T., Plantard O. A northward colonization of the Andes by the potato cyst nematode during geological times suggests multiple host-shifts from the wild to cultivated potatoes. Molecular Phylogenetics and Evolution. 2007. V. 42 (2). P. 308-316. doi: 10.1016/j.ympev.2006.06.018
Plantard O., Picard D., Valette S., Scurrah M., Grenier E., Mugniery D. Origin and genetic diversity of Western European populations of the potato cyst nematode (Globodera pallida) inferred from mitochondrial sequences and microsatellite loci. Molecular Ecology. 2008. V. 17 (9). P. 2208-2218. doi: 10.1111/j.1365-294X.2008.03718.x
Thiéry M., Mugniéry D. Microsatellite loci in the phytoparasitic nematode Globodera. Genome. 2000. V. 43. P. 160-165. doi: 10.1139/gen-43-1-160
Uehara T., Mizukubo T., Kushida A., Momota Y. Identification of Pratylenchus coffeae and P. loosi using specific primers for PCR amplification of ribosomal DNA. Nematologica. 1998. V. 44. Р. 357-368. doi: 10.1163/005525998X00034
Plantard O., Porte C. Isolation and characterization of microsatellite loci in the sugar beet cyst nematode Heterodera schachtii. Molecular Ecology Notes. 2003. V. 3 (1). P. 139-141. doi: 10.1046/j.1471-8286.2003.00383.x
Plantard O., Porte C. Population genetic structure of the sugar beet cyst nematode Heterodera schachtii: a gonochoristic and amphimictic species with highly inbred but weakly differentiated populations. Molecular Ecology. 2004. V. 13 (1). P. 33-41. doi: 10.1046/j.1365-294X.2003.02023.x