Population structure of Triticum aestivum L. of the Steppe of Ukraine at the storage protein loci in different periods of breeding
Abstract
Aim. Frequencies of alleles at storage protein loci and the population structure were studied in groups of winter common wheat cultivars developed in different periods of time in the leading breeding center of the Steppe of Ukraine, the Plant Breeding and Genetics Institute (PBGI). Methods. Storage protein allele frequencies were analyzed in 167 PBGI cultivars divided into three groups based on the registration time: before 1996, from 1996 till 2010, an after 2010. APAG electrophoresis of gliadins was performed by the procedure of Kozub et al. 2009. High-molecular-weight glutenin subunits were analyzed by SDS-electrophoresis according to Laemmli. The population structure was studied using the STRUCTURE software. Results. Changes in the population structure of PBGI cultivars were revealed: in the group of cultivars developed after 2010, the change of the predominant cluster took place in comparison with the cultivars released before 1996. Changes of frequencies of certain alleles at the studied loci in groups of cultivars developed in different periods of time were correlated with changes of the average annual temperature in the periods of development of these cultivars. Conclusions. Temporal changes of frequencies of certain alleles at storage protein loci are most probably caused by global warming. The increase in the contribution of germplasm from regions with higher temperatures may be expected for breeding of common wheat cultivars ins the Steppe of Ukraine.
Keywords: common wheat, alleles, gliadins, high-molecular-weight glutenin subunits, global warming.
References
Sozinov A.A. Protein polymorphism and its importance in genetics and breeding. Moscow: Nauka, 1985. 272 p. [in Russian]
Sozinov A., Sozinov I., Kozub N., Sobko T. Stable gene associations in breeding and evolution of grasses. Evolutionary theory and processes: modern perspectives. Papers in Honor of Eviatar Nevo. Wasser, S.P. (ed.), Kluwer Academic Publishers, 1999. P. 97–113.
Nevo E., Payne P.I. Wheat storage proteins: diversity of HMW glutenin subunits in wild emmer from Israel. 1. Geograph-ical patterns and ecological predictability. Theor. Appl. Genet. 1987. Vol. 74. P. 827–836.
Wrigley C.W., Békés F., Cavagh C.R., Bushuk W. The Gluten Composition of Wheat Varieties and Genotypes, 2006. Accessed from: www.cerealsgrains.org/initiatives/definitions/Documents/GlutenFree/II_HMW_Subunits.pdf
Metakovsky E., Melnik V., Rodriguez-Quijano M., Upelniek V., Carrillo J.M. A catalog of gliadin alleles: Polymorphism of 20th-century common wheat germplasm. The Crop Journal. 2018. Vol. 6 (6). P. 628–641. doi:10.1016/j.cj.2018.02.003.
Payne P.I. Genetics of wheat storage proteins and the effect of allelic variation on bread-making quality. Annual Review of Plant Physiology. 1987. Vol. 38. P. 141–153.
McIntosh R.A. Catalogue of Gene Symbols. Gene Catalogue 2013. Retrieved from: https://shigen.nig.ac.jp/wheat/komugi/genes/macgene/2013/GeneSymbol.pdf
Boychenko S., Voloshchuk V., Movchan Ya., Serdjuchenko N., Tkachenko V., Tyshchenko O., Savchenko S. Features of climate change un Ukraine: scenarios, consequences for nature and agroecosystems, Proceedings of the National Aviation University. 2016. Vol. 69 (4). P. 96–113. doi: 10.18372/2306-1472.69.11061.
Kozub N.A., Sozinov I.A., Sobko T.A., Kolyuchii V.T., Kuptsov S.V., Sozinov A.A. Variation at storage protein loci in winter common wheat cultivars of the Central Forest-Steppe of Ukraine. Cytol. Genet. 2009. Vol. 43 (1). P. 55–62. doi: 10.3103/S0095452717020050.
Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970. Vol. 227 (5259). P. 680–685. doi: 10.1038/227680a0.
Kozub N.A., Sozinov I.A., Karelov A.V., Blume Ya.B., Sozinov A.A. Diversity of Ukrainian winter common wheat varie-ties with respect to storage protein loci and molecular markers for disease resistance genes. Cytol Genet. 2017. Vol. 51 (2). P. 117–129. doi: 10.3103/S0095452717020050.
Payne P.I., Lawrence G. Catalogue of alleles for the complex gene loci, Glu-A1, Glu-B1, Glu-D1 which code for high-molecular-weight subunits of glutenin in hexaploid wheat. Cereal Research Comm. 1983. Vol. 11. P. 29–34.
Wrigley C.W., Asenstorfer R., Batey I.L., Cornish G.B., Day L., Mares D., Mrva K. The biochemical and molecular basis of wheat quality. Chapter 21. Wheat: Science and Trade. Carver B.F. (Ed.). Oxford. UK: Wiley-Blackwell. 2009. P. 495–520.
Metakovsky E.V. Gliadin allele identification in common wheat. II Catalogue of gliadin alleles in common wheat. J. Genet. Breed. 1991. Vol. 45. P. 325–344.
Sobko T.A., Poperelya F.A. The frequency of alleles of gliadin-coding loci in different cultivars of winter common wheat. Visnyk Silskohospodarskoi Nauki. 1986. No. 5. P. 84–87. [in Ukrainian]
Pritchard J.R., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000. Vol. 155 (2). P. 945–959.
Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 2005. Vol. 14 (8). P. 2611–2620. doi: 10.1111/j.1365-294X.2005.02553.x.
Earl. D.A., vonHoldt. B.M. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources. 2012. Vol. 4 (2). P. 359–361. doi: 10.1007/s12686-011-9548-7.
Poperelya F.O., Blagodarova O.M. Genetics of grain quality of first Ukrainian genotypes of superstrong wheat. Tsitol Genet. 1998. Vol. 32 (6). P. 11–19. [in Ukrainian]
Diab A., Kantety R.V., Ozturk N.Z., Benscher D., Nachit M.V., Sorrells M.E. Drought – inducible genes and differentially expressed sequence tags associated with components of drought tolerance in durum wheat. Scientific Research and Essay. 2008. Vol. 3. P. 9–26.
Joukhadar R., Daetwyler H.D., Bansal U.K., Gendall A.R., Hayden M.J. Genetic Diversity, Population Structure and Ancestral Origin of Australian wheat. Front. Plant Sci. 2017. Vol. 8. 2115. doi: 10.3389/fpls.2017.02115.