Non-additive expression of awn development regulatory genes in the bread wheat lines with introgressions from Amblyopyrum muticum
Abstract
Aim. Nonadditive expression of homeotic genes is considered to cause the development of nonparental phenotypes in the plants of hybrid origin. Previously, orthologs of rice and barley awn development regulators TaTOB1, TaDL, TaKNOX3, and TaETT2 were identified in the bread wheat genome sequence. Nonadditive expression of these regulators can be the reason for the emergence of non-parental terminally awned phenotypes among the bread wheat lines with introgressions from Amblyopyrum muticum Methods. Gene expression was identified with end-point detection RT-qPCR Results. Introgressive lines have expression of TaTOB1, TaKNOX3, and TaETT2 at the lower level compared to parents. As orthologs of TaTOB1 and TaKNOX3 are negative regulators of awn development in rice and barley, their reduced expression could have caused the appearance of terminally awned plants among introgressive lines. Neverthless, the reduced expression of the genes wasn’t specific to the lines with non-parental phenotype. Conclusions. Due to the lack of correlation between reduced expression of the genes studied and non-parental phenotype of the introgressive lines, the role of nonadditive expression of TaTOB1, TaKNOX3, and TaETT2 in the development of this phenotype is not clear.
Keywords: amphidiploids, non-additive expression, developmental genetics, awns.
References
Pumphrey M., Bai J., Laudencia-Chingcuanco D., Anderson O., Gill B.S. Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat. Genetics. 2009. Vol. 181. P. 1147–1157.
He P., Friebe B.R., Gill B.S., Zhou J-M. Allopolyploidy alters gene expression in the highly stable hexaploid wheat. Plant Mol Biol. 2003. Vol. 52. P. 401–414.
Liu B., Xu C., Zhao N., Qi B., Kimatu J. N., Pang J. et al. Rapid genomic changes in polyploid wheat and related species: im-plications for genome evolution and genetic improvement. J Genet Genomics. 2009. Vol. 36. P. 519–528.
Chen Z.J., Ni Z. Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. Bioessays. 2006. Vol. 28. P. 240–252.
Kashkush K., Feldman M., Levy A. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics. 2002. Vol. 160. P. 1651–1659.
Feldman M., Levy A. Genome evolution due to allopolyploidization in wheat. Genetics. 2012. Vol. 192. P. 763–774.
Jackson S., Chen Z. J. Genomic and expression plasticity of polyploidy. Curr Opin Plant Biol. 2010. Vol. 13. P. 153–159.
Song Q., Chen Z.J. Epigenetic and developmental regulation in plant polyploids. Curr Opin Plant Biol. 2015. Vol. 24. P. 101–109.
Chen Z.J. Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annu Rev Plant Biol. 2007. Vol. 58. P. 377–406.
Toriba T., Hirano H-Y. The DROOPING LEAF and OsETTIN2 genes promote awn development in rice. Plant J. 2014. Vol. 77. P. 616–626.
Tanaka W., Toriba T., Ohmori Y., Yoshida A., Kawai A., Mayama-Tsuchida T. et al. The YABBY Gene TONGARI-BOUSHI1 Is Involved in Lateral Organ Development and Maintenance of Meristem Organization in the Rice Spikelet. Plant Cell. 2012. Vol. 24. P. 80–95.
Müller K.J., Romano N., Gerstner O., Garcia-Maroto F., Pozzi C., Salamini F. et al. The barley Hooded mutation caused by a duplication in a homeobox gene intron. Nature. 1995. Vol. 374. P. 727–730.
Navalikhina A., Antonyuk M., Pasichnyk T., Ternovska T. Identification of Oryza sativa awn development regulatory genes orthologs in Triticinae accessions. Cytol Genet. 2019. Vol. 53 (in press).
Ishikawa M, Ohmori Y, Tanaka W, Hirabayashi C, Murai K, Ogihara Y, et al. The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses. Genes Genet Syst. 2009. Vol. 84. P. 137–146.
Iefimenko T.S., Antonyuk M.Z., Martynenko V.S., Navalihina A.G., Ternovska T.K. Introgression of Aegilops mutica Genes into Common Wheat Genome. Cytology and Genetics. 2018. Vol. 52. P. 21–30.
Navalikhina A., Antonyuk M., Ternovska T. CDDP Markers MYB and MYC Spectra Variability in Introgressive Wheat Lines. Factors in Experimental Evolution of Organisms. 2017. Vol. 20. P. 73–78. [in Ukrainian]
Peng J., Xia Z., Chen L., Shi M., Pu J., Guo J. et al. Rapid and Efficient Isolation of High-Quality Small RNAs from Recalci-trant Plant Species Rich in Polyphenols and Polysaccharides. PloS ONE. 2014. Vol. 9. P. 12–14.
Ye J., Coulouris G., Zaretskaya I., Cutcutache I., Rozen S., Madden T.L. Primer-BLAST: a tool to design target-specific prim-ers for polymerase chain reaction. BMC Bioinformatics. 2012. Vol. 13. P. 134.
Debernardi J.M., Lin H., Chuck G., Faris J.D., Dubcovsky J. microRNA172 plays a crucial role in wheat spike morphogenesis and grain threshability. Development. 2017. Vol. 144. P. 1966–1975.
Nolan T., Hands R.E., Bustin S.A. Quantification of mRNA using real-time RT-PCR. Nature Protocols. 2006. Vol. 1. P. 1559–1582.
Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor laboratory press. New York. 1989. P. 931–957.
Lazar I. Gel Analyzer. URL: www.gelanalyzer.com.
Shapiro S.S., Martin B.W. An Analysis of Variance Test for Normality. Biometrika. 1965. Vol. 52. P. 591–611.
Navalikhina A., Antonyuk M., Iefimenko T., Ternovska T. Formation of awns in wheat lines with introgressions from Ae-gilops spp. caused by non-additive expression of novel regulatory genes. Unpublished.